Talks and Poster Presentations (with Proceedings-Entry):
T. Klein, P. Mindek, L. Autin, D. Goodsell, A. Olson, E. Gröller, I. Viola:
"Parallel Generation and Visualization of Bacterial Genome Structures";
Talk: Pacific Graphics 2019,
Seoul Korea university;
2019-10-14
- 2019-10-17; in: "Eurographics journal, Computer Graphics Forum (CGF) Volume 38, Issue 7",
Eurographics journal, Computer Graphics Forum (CGF),
Volume 38, Issue 7
(2019),
57
- 68.
English abstract:
Visualization of biological mesoscale models provides a glimpse at the inner workings of living cells. One of the most complex components of these models is DNA, which is of fundamental importance for all forms of life. Modeling the 3D structure of genomes has previously only been attempted by sequential approaches. We present the first parallel approach for the instant construction of DNA structures. Traditionally, such structures are generated with algorithms like random walk, which have inherent sequential constraints. These algorithms result in the desired structure, are easy to control, and simple to formulate. Their execution, however, is very time-consuming, as they are not designed to exploit parallelism. We propose an approach to parallelize the process, facilitating an implementation on the GPU.
"Official" electronic version of the publication (accessed through its Digital Object Identifier - DOI)
http://dx.doi.org/10.1111/cgf.13816
Electronic version of the publication:
https://publik.tuwien.ac.at/files/publik_283953.pdf
Created from the Publication Database of the Vienna University of Technology.